I'm running TWX Proxy and I noticed that when I'm running certain scripts like EProbe and Trade it's not capturing everything in the log. The Probe script will keep track of blocked/unreached sectors but it's not keeping the detail of each probe that goes out. Sometimes I see flashes of things that look like planets or traders but I can't go back to see what it was. Is there any way to fix that?

What probe script are you using? What logs are you relying on?

If you're using Swath, it will also capture planet and ship info. Just select view/planets or view ships from the menu and you'll be able to see what you've missed.

The script is called 2_Probe, it's the one that came with TWX. The log I'm looking at is just the capture file...I thought it would capture everything that scrolled up the game screen but it's not.

Do you have recording turned on in twx? It's under data. Then make sure in setup under logging you have log data according to selected database checked

Yes logging is turned on. My problem is, some things are being captured in the log, and some things are not.

I'm not using SWATH or ATTAC or TWATS or anything else, just TWX Proxy.

Logging ANSI? Logging as binary? Try toggling those. I've never had a problem with twxproxy not logging stuff.